Separating intrinsic alignment and galaxy-galaxy lensing

The coherent physical alignment of galaxies is an important systematic for gravitational lensing studies as well as a probe of the physical mechanisms involved in galaxy formation and evolution. We develop a formalism for treating this intrinsic alignment (IA) in the context of galaxy-galaxy lensing and present an improved method for measuring IA contamination, which can arise when sources physically associated with the lens are placed behind the lens due to photometric redshift scatter. We apply the technique to recent Sloan Digital Sky Survey (SDSS) measurements of Luminous Red Galaxy lenses and typical (L*) source galaxies with photometric redshifts selected from the SDSS imaging data. Compared to previous measurements, this method has the advantage of being fully self-consistent in its treatment of the IA and lensing signals, solving for the two simultaneously. We find an IA signal consistent with zero, placing tight constraints on both the magnitude of the IA effect and its potential contamination to the lensing signal. While these constraints depend on source selection and redshift quality, the method can be applied to any measurement that uses photometric redshifts. We obtain a model-independent upper-limit of roughly 10% IA contamination for projected separations of approximately 0.1-100 Mpc/h. With more stringent photo-z cuts and reasonable assumptions about the physics of intrinsic alignments, this upper limit is reduced to 1-2%. These limits are well below the statistical error of the current lensing measurements. Our results suggest that IA will not present intractable challenges to the next generation of galaxy-galaxy lensing experiments, and the methods presented here should continue to aid in our understanding of alignment processes and in the removal of IA from the lensing signal.Comment: 31 pages, 8 Figures. Minor changes to reflect published versio

Generalized Automorphisms of Channel Codes: Properties, Code Design, and a Decoder

Low-density parity-check codes together with belief propagation (BP) decoding are known to be well-performing for large block lengths. However, for short block lengths there is still a considerable gap between the performance of the BP decoder and the maximum likelihood decoder. Different ensemble decoding schemes such as, e.g., the automorphism ensemble decoder (AED), can reduce this gap in short block length regime. We propose a generalized AED (GAED) that uses automorphisms according to the definition in linear algebra. Here, an automorphism of a vector space is defined as a linear, bijective self-mapping, whereas in coding theory self-mappings that are scaled permutations are commonly used. We show that the more general definition leads to an explicit joint construction of codes and automorphisms, and significantly enlarges the search space for automorphisms of existing linear codes. Furthermore, we prove the concept that generalized automorphisms can indeed be used to improve decoding. Additionally, we propose a code construction of parity check codes enabling the construction of codes with suitably designed automorphisms. Finally, we analyze the decoding performances of the GAED for some of our constructed codes.Comment: Submitted to IEEE Updated References. Corrected typos. Revised argument in section 5, results unchange

Detecting Galaxy-Filament Alignments in the Sloan Digital Sky Survey III

Previous studies have shown the filamentary structures in the cosmic web influence the alignments of nearby galaxies. We study this effect in the LOWZ sample of the Sloan Digital Sky Survey using the "Cosmic Web Reconstruction" filament catalogue. We find that LOWZ galaxies exhibit a small but statistically significant alignment in the direction parallel to the orientation of nearby filaments. This effect is detectable even in the absence of nearby galaxy clusters, which suggests it is an effect from the matter distribution in the filament. A nonparametric regression model suggests that the alignment effect with filaments extends over separations of 30-40 Mpc. We find that galaxies that are bright and early-forming align more strongly with the directions of nearby filaments than those that are faint and late-forming; however, trends with stellar mass are less statistically significant, within the narrow range of stellar mass of this sample.Comment: 14 pages, 13 figures. Accepted to the MNRA

Systematic errors in weak lensing: application to SDSS galaxy-galaxy weak lensing

Weak lensing is emerging as a powerful observational tool to constrain cosmological models, but is at present limited by an incomplete understanding of many sources of systematic error. Many of these errors are multiplicative and depend on the population of background galaxies. We show how the commonly cited geometric test, which is rather insensitive to cosmology, can be used as a ratio test of systematics in the lensing signal at the 1 per cent level. We apply this test to the galaxy-galaxy lensing analysis of the Sloan Digital Sky Survey (SDSS), which at present is the sample with the highest weak lensing signal to noise and has the additional advantage of spectroscopic redshifts for lenses. This allows one to perform meaningful geometric tests of systematics for different subsamples of galaxies at different mean redshifts, such as brighter galaxies, fainter galaxies and high-redshift luminous red galaxies, both with and without photometric redshift estimates. We use overlapping objects between SDSS and the DEEP2 and 2SLAQ spectroscopic surveys to establish accurate calibration of photometric redshifts and to determine the redshift distributions for SDSS. We use these redshift results to compute the projected surface density contrast DeltaSigma around 259 609 spectroscopic galaxies in the SDSS; by measuring DeltaSigma with different source samples we establish consistency of the results at the 10 per cent level (1-sigma). We also use the ratio test to constrain shear calibration biases and other systematics in the SDSS survey data to determine the overall galaxy-galaxy weak lensing signal calibration uncertainty. We find no evidence of any inconsistency among many subsamples of the data.Comment: 39 pages, 19 figure

An Empirical Model For Intrinsic Alignments: Insights From Cosmological Simulations

We extend current models of the halo occupation distribution (HOD) to include a flexible, empirical framework for the forward modeling of the intrinsic alignment (IA) of galaxies. A primary goal of this work is to produce mock galaxy catalogs for the purpose of validating existing models and methods for the mitigation of IA in weak lensing measurements. This technique can also be used to produce new, simulation-based predictions for IA and galaxy clustering. Our model is probabilistically formulated, and rests upon the assumption that the orientations of galaxies exhibit a correlation with their host dark matter (sub)halo orientation or with their position within the halo. We examine the necessary components and phenomenology of such a model by considering the alignments between (sub)halos in a cosmological dark matter only simulation. We then validate this model for a realistic galaxy population in a set of simulations in the Illustris-TNG suite. We create an HOD mock with Illustris-like correlations using our method, constraining the associated IA model parameters, with the $\chi^2_{\rm dof}$ between our model's correlations and those of Illustris matching as closely as 1.4 and 1.1 for orientation--position and orientation--orientation correlation functions, respectively. By modeling the misalignment between galaxies and their host halo, we show that the 3-dimensional two-point position and orientation correlation functions of simulated (sub)halos and galaxies can be accurately reproduced from quasi-linear scales down to $0.1~h^{-1}{\rm Mpc}$. We also find evidence for environmental influence on IA within a halo. Our publicly-available software provides a key component enabling efficient determination of Bayesian posteriors on IA model parameters using observational measurements of galaxy-orientation correlation functions in the highly nonlinear regime.Comment: 17 pages, 12 figures, 3 tables, for submission to The Open Journal of Astrophysics, code available at https://github.com/astropy/halotool

Wide-field Multi-object Spectroscopy to Enhance Dark Energy Science from LSST

LSST will open new vistas for cosmology in the next decade, but it cannot reach its full potential without data from other telescopes. Cosmological constraints can be greatly enhanced using wide-field ($>20$ deg$^2$ total survey area), highly-multiplexed optical and near-infrared multi-object spectroscopy (MOS) on 4-15m telescopes. This could come in the form of suitably-designed large surveys and/or community access to add new targets to existing projects. First, photometric redshifts can be calibrated with high precision using cross-correlations of photometric samples against spectroscopic samples at $0 < z < 3$ that span thousands of sq. deg. Cross-correlations of faint LSST objects and lensing maps with these spectroscopic samples can also improve weak lensing cosmology by constraining intrinsic alignment systematics, and will also provide new tests of modified gravity theories. Large samples of LSST strong lens systems and supernovae can be studied most efficiently by piggybacking on spectroscopic surveys covering as much of the LSST extragalactic footprint as possible (up to $\sim20,000$ square degrees). Finally, redshifts can be measured efficiently for a high fraction of the supernovae in the LSST Deep Drilling Fields (DDFs) by targeting their hosts with wide-field spectrographs. Targeting distant galaxies, supernovae, and strong lens systems over wide areas in extended surveys with (e.g.) DESI or MSE in the northern portion of the LSST footprint or 4MOST in the south could realize many of these gains; DESI, 4MOST, Subaru/PFS, or MSE would all be well-suited for DDF surveys. The most efficient solution would be a new wide-field, highly-multiplexed spectroscopic instrument in the southern hemisphere with $>6$m aperture. In two companion white papers we present gains from deep, small-area MOS and from single-target imaging and spectroscopy.Comment: Submitted to the call for Astro2020 science white papers; tables with estimates of telescope time needed for a supernova host survey can be seen at http://d-scholarship.pitt.edu/id/eprint/3604

BLIMP1 Is a Tumor Suppressor Gene Frequently Disrupted in Activated B Cell-like Diffuse Large B Cell Lymphoma

SummaryDiffuse large B cell lymphoma (DLBCL) is a heterogeneous disease composed of at least two distinct subtypes: germinal center B cell-like (GCB) and activated B cell-like (ABC) DLBCL. These phenotypic subtypes segregate with largely unique genetic lesions, suggesting the involvement of different pathogenetic mechanisms. In this report we show that the BLIMP1/PRDM1 gene is inactivated by multiple mechanisms, including homozygous deletions, truncating or missense mutations, and transcriptional repression by constitutively active BCL6, in ∼53% of ABC-DLBCL. In vivo, conditional deletion of Blimp1 in mouse B cells promotes the development of lymphoproliferative disorders recapitulating critical features of the human ABC-DLBCL. These results demonstrate that BLIMP1 is a bona fide tumor-suppressor gene whose loss contributes to lymphomagenesis by blocking plasma cell differentiation